Tag Archives: crop wild relatives

Miracles Performed by Wild Crops

Leave a reply

Grains that grow year after year without having to be replanted could save money, help the environment, and reduce the need for back-breaking labor. Now, the largest real-world test of such a crop—a perennial rice grown in China—is showing promise. Perennial rice can yield harvests as plentiful as the conventional, annually planted crop while benefiting the soil and saving smallholder farmers considerable labor and expense, researchers have found…

All rice is perennial to some extent. Unlike wheat or corn, rice roots sprout new stems after harvest. The trouble is that this second growth doesn’t yield much grain, which is why farmers plow up the paddies and plant new seedlings. The improved perennial rice, in contrast, grows back vigorously for a second harvest. Researchers developed it by crossing an Asian variety of rice with a wild, perennial relative from Nigeria. Improving the offspring took decades, and in 2018 a variety called Perennial Rice 23 (PR23) became commercially available to Chinese farmers. This was a “scientific breakthrough,” says Koichi Futakuchi, a crop scientist at the Africa Rice Center…

Over 4 years PR23 averaged 6.8 tons of rice per hectare, slightly higher than the annual rice, they report today in Nature Sustainability. As hoped, the perennial crop tended to grow back again and again without sacrificing the size of the harvest. In the fifth year, however, the yields of PR23 declined for some reason, suggesting it needed to be replanted. The perennial rice also improved the soil.

Researchers note potential risks. Because PR23 enables farmers to till less, fungi and other pathogens can build up in the fields. Insects can persist in the stubble after harvest, because it’s not plowed under, then transmit viruses when they feed on the regenerating sprouts in the spring. And without tilling, weeds can flourish; the researchers found that fields with PR23 needed one to two more herbicide treatments than regular rice. They also note that it’s more work to resow the perennial rice when its yield falters, because its larger and deeper roots need to be killed.

Excerpts from ‘Perennial’ rice saves time and money, but comes with risks, Science, Nov. 7, 2022

Reversing Industrialization: the Future of Plants?

Leave a reply

Is it possible that the microbiomes of ancestors of our crops can be used to “rewild” microbiomes of current crops reinstating their diverse microbiota that were lost through domestication and industrialization processes, including including the (over)use of antibiotics, pesticides, and fertilizers?

Similar to reversing industrialization-associated changes in human gut microbiota , plant microbiome rewilding builds on the premise that wild ancestors harbor microbial genera with specific traits that are not found (or are strongly depleted) in the microbiome of modern crops. To date, however, it is unknown for most plant species whether (and which) microbial genera and functions were lost during plant domestication, and to what extent rewilding can enhance the health and sustainability of modern crops. In animal systems, the effectiveness of rewilding approaches is intensely debated , and similar discussions are needed for crop rewilding approaches.

Plant domestication is one of the most important accomplishments in human history, helping drive the transition from a nomadic to a sedentary lifestyle. Through stepwise processes, crop plants acquired a suite of new traits, including larger seeds, determinate growth, photoperiod sensitivity, and reduced levels of bitter substances. Although this led to a more continuous food supply, domestication caused a reduction in plant genetic diversity because only desired alleles were spread, while genomic regions next to the target genes suffered selective sweeps (6). This so-called “domestication syndrome” decreased the ability of crops to withstand pests and diseases

Excerpts from JOS M. RAAIJMAKERS AND E. TOBY KIERM, Microbiota of crop ancestors may offer a way to enhance sustainable food production, Science, Nov. 11, 2022

Radical New Potatoes

Leave a reply

Potatoes are already a staple for 1.3 billion people… but unlike other major crops, however, the potato has not had a breeding breakthrough of the kind that helped dramatically boost yields during the Green Revolution of the 1950s and 1960s. The reason is that creating a new potato variety is slow and difficult, even by the patient standards of plant breeders…Readying a new potato variety for farm fields can take a decade or more.  Many countries continue to plant popular potato varieties that have remained essentially unchanged for decades. But new approaches, including genetic engineering, promise to add more options. Potato breeders are particularly excited about a radical new way of creating better varieties. This system, called hybrid diploid breeding, could cut the time required by more than half, make it easier to combine traits in one variety, and allow farmers to plant seeds instead of bulky chunks of tuber. 

Solynta Hybrid Potato Seeds

To breed a better potato, it helps to have plenty of genetic raw material on hand. But the world’s gene banks aren’t fully stocked with the richest source of valuable genes: the 107 potato species that grow in the wild. Habitat loss threatens many populations of those plants. In a bid to preserve that wild diversity before it vanishes, collectors have made their biggest push ever, part of a $50 million program coordinated by the Crop Trust, an intergovernmental organization based in Bonn, Germany.

The Crop Trust has provided grants and training to collectors around the world. The effort on wild potatoes, which wraps up this month, has yielded a collection representing 39 species from six nations: Peru, Brazil, Ecuador, Guatemala, Costa Rica, and Chile. Zorrilla’s team alone found 31 species in Peru, including one for which no seeds had ever been collected. They plan to continue to search for four other species still missing from gene banks. “We will not stop,” she says. The plants are being stored in each nation’s gene bank, CIP, and the Millennium Seed Bank at the Royal Botanic Gardens, Kew, in the United Kingdom. The stored seeds will be available to potato breeders worldwide.

THE HARDEST PART comes next: getting desirable genes from wild species into cultivated potatoes….Other researchers are skirting the limitations of traditional breeding by using genetic engineering. CIP’s Marc Ghislain and colleagues, for example, have directly added genes to already successful potato varieties without altering the plants in any other way—an approach not possible with traditional breeding. They took three genes for resistance to late blight from wild relatives and added them to varieties of potato popular in East Africa.

Potato Blight , a disease affecting potatoes

The engineered varieties have proved successful in 3 years of field tests in Uganda and are undergoing final studies for regulators. Transgenic potatoes that resist late blight have already been commercialized in the United States and Canada….

Pim Lindhout has been plotting a revolution that would do away with much of that tedium and complexity. As head of R&D for Solynta, a startup company founded in 2006, he and his colleagues have been developing a new way to breed potatoes….Breeders reduce the complexity either by using species with only two sets of chromosomes (known as diploids) or by manipulating domesticated potatoes to cut the number of chromosomes in half. With persistence, diploid potatoes can be inbred. In 2011, Lindhout published the first report of inbred diploid lines that are vigorous and productive. More recently, Jansky and colleagues also created inbred diploid lines.

Such diploid inbred plants are at the heart of Solynta’s strategy to revolutionize potato breeding. Other firms, including large seed companies, are also working to develop hybrid potatoes. HZPC in Joure, the Netherlands, has begun field trials in Tanzania and in several countries in Asia.

Excerpt from Erik Stokstad, The new potato, Science, Feb. 8, 2019

Biodiversity: the wild relatives of crops

Leave a reply

“Crop wild relatives”—the wild ancestors of cultivated plants—are a valuable weapon in the fight against hunger. Together with varieties used by traditional farmers, they contain a wealth of genetic diversity. Yet they are under-researched and under-collected. With their survival threatened by population growth and environmental damage, the race is on to find them before it is too late.

Climate change is expected to cause higher temperatures and more frequent droughts, changing the distribution of pests and diseases. Population growth will add to the pressure on productive land: the UN expects the number of people in the world to rise from 7.3 billion today to 9.7 billion by 2050. …Dependence on a few staples worsens the consequences of any crop failure. Just 30 crops provide humans with 95% of the energy they get from food, and just five—rice, wheat, maize, millet and sorghum—provide 60%. A single variety of banana—Cavendish—accounts for 95% of exports. A fast-spreading pest or disease could see some widely eaten foodstuffs wiped out.

That makes it even more important to preserve the genetic diversity found in crop wild relatives and traditional varieties as an insurance policy. Alas, much of it has already disappeared. The FAO estimates that 75% of the world’s crop diversity was lost between 1900 and 2000. As farming intensified, commercial growers favoured a few varieties of each species—those that were most productive and easiest to store and ship.

According to Cary Fowler of the Global Crop Diversity Trust, an international organisation based in Germany, in the 1800s American farmers and gardeners grew 7,100 named varieties of apple. Today, at least 6,800 of them are no longer available, and a study in 2009 found that 11 accounted for more than 90% of those sold in America. Just one, “Red Delicious”, a variety with a thick skin that hides bruises, accounts for 37%.

Seed banks are the best hope of preserving those that remain. Dehydrating and freezing seeds means that they can be kept for hundreds, perhaps even thousands, of years, and still sprout when given light and water (as botanists need to do on occasion). Some 7.4m samples are already in seed banks around the world, but huge gaps exist.

As part of a study to be published later this year, Colin Khoury and Nora Castañeda-Álvarez of the International Centre for Tropical Agriculture (CIAT), a research facility in Colombia, studied the state of conservation of more than a thousand crop wild relatives in seed banks. They found that for over 70% there were either too few samples for safety or none at all.

The Millennium Seed Bank (MSB) in Sussex, part of Britain’s Royal Botanic Gardens, is the world’s largest wild-plant seed bank, housing 76,000 samples from more than 36,000 species. It co-ordinates “Adapting Agriculture to Climate Change”, a $50m, ten-year international programme funded by Norway to collect and store wild relatives of 29 important crops, cross them with their domesticated kin and share the results with breeders and farmers. Its freezers are solar-powered and its vault is built to withstand a direct hit by a plane (Gatwick airport is close by). Other seed banks are more vulnerable. Staff at the International Centre for Agricultural Research in the Dry Areas, an institute once based in Syria, now found in Lebanon, shipped 150,000 samples to save them from being damaged in the former country’s civil war; seed banks in Afghanistan and Iraq have been destroyed. The Philippines lost one to fire.

Located in Cali, Colombia’s third-largest city, CIAT is home to more than 300 scientists. It has a mandate from the UN to protect, research and distribute beans and cassava, staple foodstuffs for 900m people around the world. Its seed bank, housed in a former abattoir, contains over 36,000 samples of beans, more than any other seed bank, and varieties developed there feed 30m people in Africa.

For many years CIAT’s researchers concentrated on creating varieties that could cope with poor soils and drought. But they have now turned their attention to heat resistance. Earlier this year they announced that they had found heat resistance in the tepary bean, a hardy cousin of the common bean cultivated since pre-Columbian times in northern Mexico and America’s south-west. Crosses with commonly cultivated beans such as pinto, black and kidney beans show potential to withstand temperatures up to 5°C higher than those common varieties can cope with. Even a lesser increase in heat resistance, of 3°C, would mean beans could continue to be cultivated in almost all parts of central and eastern Africa, says Steve Beebe of CIAT’s bean-breeding programme…

The International Treaty on Plant Genetic Resources for Food and Agriculture, which came into effect in 2004 and has been signed by 135 countries and the European Union, identifies 35 food crops that are considered so important to global food security and sustainable agriculture that their genetic diversity should be widely shared. But it has worked less well than hoped. In 2013 a group of Norwegian researchers sent letters to 121 countries requesting seeds. Only 44 complied. Communication broke down with 23 and 54 did not even reply.

If a big crop were to fail, a single useful gene lurking in one wild relative could prevent calamity. PwC, an accountancy firm, values the genes derived from the wild relatives of the 29 crops regarded as most important by the MSB at $120 billion. Preserving the genetic diversity that remains would be an excellent investment.

Agricultural Biodiversity, Banks for Bean Counters, Economist, Sept. 12, 2015, at 54